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          <td class="headerValue" width="80%" colspan=4><a href="../../../../../../../index.html">directory</a> - <a href="index.html">home/jkbs/src/zpr/imageeditor/MBI_svn/algorithm</a> - Path.hpp</td>
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          <td class="headerValue" width="80%" colspan=4>mbi.info</td>
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          <td class="headerItem" width="20%">Date:</td>
          <td class="headerValue" width="20%">2010-01-23</td>
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          <td class="headerItem" width="20%">Instrumented&nbsp;lines:</td>
          <td class="headerValue" width="20%">3</td>
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          <td class="headerValue" width="20%">100.0 %</td>
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      <td><pre class="source">
<span class="lineNum">       1 </span>                : #ifndef _PATH_HPP_
<span class="lineNum">       2 </span>                : #define _PATH_HPP_
<span class="lineNum">       3 </span>                : 
<span class="lineNum">       4 </span>                : #include &lt;boost/shared_ptr.hpp&gt;
<span class="lineNum">       5 </span>                : #include &lt;vector&gt;
<span class="lineNum">       6 </span>                : #include &quot;Matrix.hpp&quot;
<span class="lineNum">       7 </span>                : 
<span class="lineNum">       8 </span>                : typedef std::vector&lt;std::vector&lt;int&gt; &gt; MatrixType;
<span class="lineNum">       9 </span>                : typedef MatrixType::const_iterator ConstItr2D;
<span class="lineNum">      10 </span>                : 
<span class="lineNum">      11 </span>                : typedef boost::shared_ptr&lt;MatrixType&gt; PMatrixType;
<span class="lineNum">      12 </span>                : 
<span class="lineNum">      13 </span>                : typedef std::vector&lt;int&gt; ArrayType;
<span class="lineNum">      14 </span>                : typedef ArrayType::const_iterator ConstItr1D;
<span class="lineNum">      15 </span>                : 
<span class="lineNum">      16 </span>                : class Path {
<span class="lineNum">      17 </span>                : public:
<span class="lineNum">      18 </span>                :         Path();
<span class="lineNum">      19 </span>                :         ~Path();
<span class="lineNum">      20 </span>                : 
<span class="lineNum">      21 </span>                :         void findPath(const PMatrixType matrix);
<span class="lineNum">      22 </span><span class="lineCov">              1 :         PMatrixType getPath() { return path_; }</span>
<span class="lineNum">      23 </span>                :         void reconstructAlignment(const PSequence seq1, const PSequence seq2);
<span class="lineNum">      24 </span><span class="lineCov">              1 :         PSequence getFirstAlignment() { return firstAlignment_; }</span>
<span class="lineNum">      25 </span><span class="lineCov">              1 :         PSequence getSecondAlignment() { return secondAlignment_; }</span>
<span class="lineNum">      26 </span>                : 
<span class="lineNum">      27 </span>                : private:
<span class="lineNum">      28 </span>                :         void findMaxValue(const PMatrixType matrix);
<span class="lineNum">      29 </span>                : 
<span class="lineNum">      30 </span>                :         PMatrixType path_;
<span class="lineNum">      31 </span>                :         PSequence firstAlignment_;
<span class="lineNum">      32 </span>                :         PSequence secondAlignment_;
<span class="lineNum">      33 </span>                : };
<span class="lineNum">      34 </span>                : 
<span class="lineNum">      35 </span>                : #endif // _PATH_HPP_
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  <tr><td class="versionInfo">Generated by: <a href="http://ltp.sourceforge.net/coverage/lcov.php" target="_parent">LTP GCOV extension version 1.6</a></td></tr>
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